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Abstract Restoration of soil microbial communities, and microbial mutualists in particular, is increasingly recognized as critical for the successful restoration of grassland plant communities. Although the positive effects of restoring arbuscular mycorrhizal fungi during the restoration of these systems have been well documented, less is known about the potential importance of nitrogen‐fixing rhizobium bacteria, which associate with legume plant species that comprise an essential part of grassland plant communities, to restoration outcomes. In a series of greenhouse and field experiments, we examined the effects of disturbance on rhizobium communities, how plant interactions with these mutualists changed with disturbance, and whether rhizobia can be used to enhance the establishment of desirable native legume species in degraded grasslands. We found that agricultural disturbance alters rhizobium communities in ways that affect the growth and survival of legume species. Native legume species derived more benefit from interacting with rhizobia than did non‐native species, regardless of rhizobia disturbance history. Additionally, slow‐growing, long‐lived legume species received more benefits from associating with rhizobia from undisturbed native grasslands than from associating with rhizobia from more disturbed sites. Together, this suggests that native rhizobia may be key to enhancing the restoration success of legumes in disturbed habitats. 

Abstract Many of the disturbance‐sensitive, late successional plant species in grasslands respond to arbuscular mycorrhizal (AM) fungi more positively via growth and establishment than plants that readily establish in disturbed areas (i.e. early successional species). Inoculation with AM fungi can therefore aid the establishment of late successional species in disturbed areas. If the differential benefit of AM fungi to late versus early successional plants is context‐dependent, however, this advantage could be diminished in high phosphorus (P) post‐agricultural soils or in future climates with altered precipitation.In this greenhouse experiment, we tested if late successional plant species are less plastic in their reliance on AM fungi than early successional plants by growing 17 plant species of different successional status (9 early and 8 late successional) in full factorial combinations of inoculated or uninoculated with AM fungi, with ambient or high P levels, and with low or high levels of water.AM fungi positively affected the biomass of the 17 grassland plant species, but across all environments, late successional plant species generally responded more positively to AM fungi than early successional plants species.AM fungal growth promotion and change in below‐ground biomass allocation was generally diminished with P fertilizer across all plant species, and while there was significant variation among plant species in the sensitivity of AM fungal responsiveness to P fertilization, this differential sensitivity was not predicted by plant successional status.The role of AM fungi in plant growth promotion was not generally altered by variation in watering, however late successional plant species allocated a greater proportion of their biomass below‐ground in response to AM fungi in low versus high water conditions.Synthesis. Overall greater responsiveness to arbuscular mycorrhizal (AM) fungi by late successional species is consistent with an important role of AM fungi in plant succession, even while AM fungi are less impactful overall in high P soils. However, the increase in responsiveness of below‐ground allocation of late successional species to AM fungi in low water conditions suggests that successional dynamics may be more dependent on AM fungi in future climates that feature greater propensity for drought. 

Abstract Research suggests that microbiomes play a major role in structuring plant communities and influencing ecosystem processes, however, the relative roles and strength of change of microbial components have not been identified. We measured the response of fungal, arbuscular mycorrhizal fungal (AMF), bacteria, and oomycete composition 4 months after planting of field plots that varied in plant composition and diversity. Plots were planted using 18 prairie plant species from three plant families (Poaceae, Fabaceae, and Asteraceae) in monoculture, 2, 3, or 6 species richness mixtures and either species within multiple families or one family. Soil cores were collected and homogenized per plot and DNA were extracted from soil and roots of each plot. We found that all microbial groups responded to the planting design, indicating rapid microbiome response to plant composition. Fungal pathogen communities were strongly affected by plant diversity. We identified OTUs from genera of putatively pathogenic fungi that increased with plant family, indicating likely pathogen specificity. Bacteria were strongly differentiated by plant family in roots but not soil. Fungal pathogen diversity increased with planted species richness, while oomycete diversity, as well as bacterial diversity in roots, decreased. AMF differentiation in roots was detected with individual plant species, but not plant family or richness. Fungal saprotroph composition differentiated between plant family composition in plots, providing evidence for decomposer home-field advantage. The observed patterns are consistent with rapid microbiome differentiation with plant composition, which could generate rapid feedbacks on plant growth in the field, thereby potentially influencing plant community structure, and influence ecosystem processes. These findings highlight the importance of native microbial inoculation in restoration. 

ABSTRACT Arbuscular mycorrhizal fungi (AMF, phylum Glomeromycota) are essential to plant community diversity and ecosystem functioning. However, increasing human land use represents a major threat to native AMF globally. Characterizing the loss of AMF diversity remains challenging because many taxa are undescribed, resulting in poor documentation of their biogeography and family‐level disturbance sensitivity. We survey sites representing native and human‐altered ecosystems across the American continents—in Alaska, Kansas, and Brazil—to shed light on these gaps. Using a recently developed pipeline for phylogenetic placement of eDNA, we find evidence for three putative novel clades within the Glomeromycota, sister toEntrophosporaceae,Glomeraceae, andArchaeosporaceae, with evidence for geographic structuring. We further find that taxa in theDiversisporaceae,Glomeraceae, andEntrophosporaceaerelatively high families are overrepresented and more diverse in temperate samples. By contrast, the diversity of taxa that cannot be placed into a family is higher in tropical samples, suggesting that tropical sites harbor relatively high undescribed AMF diversity. Moreover, we find evidence thatEntrophosporaceaeis more tolerant, whileGlomeraceaeis more sensitive to disturbance. These results underscore the vast undescribed diversity of AMF while highlighting a way forward to systematically improve our understanding of AMF biogeography and response to human disturbance.